Integrated Center for Oncology

Breast Cancer Gene-Expression Miner v4.5
(bc-GenExMiner v4.5)

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Exhaustive expression analysis Tutorial

Enter input gene:

  • GENE EXPRESSION DATA Open
    • First, choose your gene expression data. Information about cohorts : microarrays, Affymetrix®, METABRIC, TCGA or SCAN-B (aka GSE81540 = GSE81538 + GSE96058)

    Then fill the textbox with actualised* gene symbol.

    *: see actualised web databases (e.g.: GeneCards, Ensembl, HGNC, NCBI Gene...)

    @: the probesets followed by "@" are described as references for subtyping ER, PR and HER2 status by means of genomics data. See Kenn et al..

  • DNA microarrays
    		• (n = 10 001)
  		• (n = 4 904)
  		• (n = 1 980)
  • RNA-seq
    		• (n = 4 712)
  		• (n = 1 034)
  		• (n = 3 678)

  • POPULATION 
    • All population sections from targeted expression analysis module will be taken into account.


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